VCF summary
Subrata Paul
2022-06-02
Overview
| key | value | |
|---|---|---|
| 2 | number of samples: | 134 |
| 3 | number of records: | 15843718 |
| 4 | number of no-ALTs: | 0 |
| 5 | number of SNPs: | 13578283 |
| 6 | number of MNPs: | 0 |
| 7 | number of indels: | 2408336 |
| 8 | number of others: | 7375 |
| 9 | number of multiallelic sites: | 730340 |
| 10 | number of multiallelic SNP sites: | 39598 |
Singletons
| key | value |
|---|---|
| allele count | 1 |
| number of SNPs | 4235387 |
| number of transitions | 2832685 |
| number of transversions | 1402702 |
| number of indels | 1245965 |
| repeat-consistent | 0 |
| repeat-inconsistent | 0 |
| [10]not applicable | 1245965 |
AF
Figure
Data
QUAL
Figure
Data
INDEL
Figure
Data
Substitution types
Figure
